diff.nim: massive code cleanups

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Araq
2018-12-12 16:17:35 +01:00
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@@ -1,145 +1,90 @@
#
#
# Nim's Runtime Library
# (c) Copyright 2018 Nim contributors
#
# See the file "copying.txt", included in this
# distribution, for details about the copyright.
#
## This Class implements the Difference Algorithm published in
## "An O(ND) Difference Algorithm and its Variations" by Eugene Myers
## Algorithmica Vol. 1 No. 2, 1986, p 251.
##
## There are many C, Java, Lisp implementations public available but they all seem to come
## from the same source (diffutils) that is under the (unfree) GNU public License
## and cannot be reused as a sourcecode for a commercial application.
## There are very old C implementations that use other (worse) algorithms.
## Microsoft also published sourcecode of a diff-tool (windiff) that uses some tree data.
## Also, a direct transfer from a C source to C# is not easy because there is a lot of pointer
## arithmetic in the typical C solutions and i need a managed solution.
## These are the reasons why I implemented the original published algorithm from the scratch and
## make it avaliable without the GNU license limitations.
## I do not need a high performance diff tool because it is used only sometimes.
## I will do some performace tweaking when needed.
##
## The algorithm itself is comparing 2 arrays of numbers so when comparing 2 text documents
## each line is converted into a (hash) number. See diffText().
##
## Some chages to the original algorithm:
## The original algorithm was described using a recursive approach and comparing zero indexed arrays.
## Extracting sub-arrays and rejoining them is very performance and memory intensive so the same
## (readonly) data arrays are passed arround together with their lower and upper bounds.
## This circumstance makes the lcs and sms functions more complicate.
## I added some code to the lcs function to get a fast response on sub-arrays that are identical,
## completely deleted or inserted.
##
## The result from a comparisation is stored in 2 arrays that flag for modified (deleted or inserted)
## lines in the 2 data arrays. These bits are then analysed to produce a array of Item objects.
##
## Further possible optimizations:
## (first rule: don't do it; second: don't do it yet)
## The arrays dataA and dataB are passed as parameters, but are never changed after the creation
## so they can be members of the class to avoid the paramter overhead.
## In sms is a lot of boundary arithmetic in the for-D and for-k loops that can be done by increment
## and decrement of local variables.
## The downVector and upVector arrays are alywas created and destroyed each time the sms gets called.
## It is possible to reuse tehm when transfering them to members of the class.
## See TODO: hints.
##
## diff.cs: A port of the algorythm to C#
## Copyright (c) by Matthias Hertel, http://www.mathertel.de
## This work is licensed under a BSD style license. See http://www.mathertel.de/License.aspx
##
## Changes:
## 2002.09.20 There was a "hang" in some situations.
## Now I undestand a little bit more of the sms algorithm.
## There have been overlapping boxes; that where analyzed partial differently.
## One return-point is enough.
## A assertion was added in createDiffs when in debug-mode, that counts the number of equal (no modified) lines in both arrays.
## They must be identical.
##
## 2003.02.07 Out of bounds error in the Up/Down vector arrays in some situations.
## The two vetors are now accessed using different offsets that are adjusted using the start k-Line.
## A test case is added.
##
## 2006.03.05 Some documentation and a direct Diff entry point.
##
## 2006.03.08 Refactored the API to static methods on the Diff class to make usage simpler.
## 2006.03.10 using the standard Debug class for self-test now.
## compile with: csc /target:exe /out:diffTest.exe /d:DEBUG /d:TRACE /d:SELFTEST Diff.cs
## 2007.01.06 license agreement changed to a BSD style license.
## 2007.06.03 added the optimize method.
## 2007.09.23 upVector and downVector optimization by Jan Stoklasa ().
## 2008.05.31 Adjusted the testing code that failed because of the optimize method (not a bug in the diff algorithm).
## 2008.10.08 Fixing a test case and adding a new test case.
## 2018.12.07 Port to Nim.
## This module implements an algorithm to compute the
## `diff`:idx: between two sequences of lines.
# code owner: Arne Döring
#
# This is based on C# code written by Matthias Hertel, http://www.mathertel.de
#
# This Class implements the Difference Algorithm published in
# "An O(ND) Difference Algorithm and its Variations" by Eugene Myers
# Algorithmica Vol. 1 No. 2, 1986, p 251.
import tables, strutils
type
Item* = object
Item* = object ## An Item in the list of differences.
startA*: int ## Start Line number in Data A.
startB*: int ## Start Line number in Data B.
deletedA*: int ## Number of changes in Data A.
insertedB*: int ## Number of changes in Data B.
DiffData = object
## Data on one input file being compared.
len: int ## Number of elements (lines).
DiffData = object ## Data on one input file being compared.
data: seq[int] ## Buffer of numbers that will be compared.
modified: seq[bool] ## Array of booleans that flag for modified
## data. This is the result of the diff.
## data. This is the result of the diff.
## This means deletedA in the first Data or
## inserted in the second Data.
SMSRD = object
x,y: int
Smsrd = object
x, y: int
proc newDiffData(initData: seq[int]): DiffData =
## Initialize the Diff-Data buffer.
result.len = initData.len
result.data = initData
result.modified = newSeq[bool](result.len + 2)
# template to avoid a seq copy. Required until ``sink`` parameters are ready.
template newDiffData(initData: seq[int]; L: int): DiffData =
DiffData(
data: initData,
modified: newSeq[bool](L + 2)
)
proc diffCodes(aText: string; h: var Table[string,int]): seq[int] =
proc len(d: DiffData): int {.inline.} = d.data.len
proc diffCodes(aText: string; h: var Table[string, int]): DiffData =
## This function converts all textlines of the text into unique numbers for every unique textline
## so further work can work only with simple numbers.
## ``aText`` the input text
## ``h`` This extern initialized hashtable is used for storing all ever used textlines.
## ``trimSpace`` ignore leading and trailing space characters
## Returns a array of integers.
# get all codes of the text
var lastUsedCode = h.len
var codes = newSeq[int]()
result.data = newSeq[int]()
for s in aText.splitLines:
if h.contains s:
codes.add h[s]
result.data.add h[s]
else:
inc lastUsedCode
h[s] = lastUsedCode
codes.add lastUsedCode
result.data.add lastUsedCode
result.modified = newSeq[bool](result.data.len + 2)
return codes
proc optimize(data: var DiffData): void =
proc optimize(data: var DiffData) =
## If a sequence of modified lines starts with a line that contains the same content
## as the line that appends the changes, the difference sequence is modified so that the
## appended line and not the starting line is marked as modified.
## This leads to more readable diff sequences when comparing text files.
## ``data`` A Diff data buffer containing the identified changes.
var startPos, endPos: int
startPos = 0
var startPos = 0
while startPos < data.len:
while (startPos < data.len) and (data.modified[startPos] == false):
while startPos < data.len and not data.modified[startPos]:
inc startPos
endPos = startPos
while (endPos < data.len) and (data.modified[endPos] == true):
var endPos = startPos
while endPos < data.len and data.modified[endPos]:
inc endPos
if (endPos < data.len) and (data.data[startPos] == data.data[endPos]):
if endPos < data.len and data.data[startPos] == data.data[endPos]:
data.modified[startPos] = false
data.modified[endPos] = true
else:
startPos = endPos
proc sms(dataA: var DiffData; lowerA, upperA: int; dataB: DiffData; lowerB, upperB: int;
downVector, upVector: var openArray[int]): SMSRD =
downVector, upVector: var openArray[int]): Smsrd =
## This is the algorithm to find the Shortest Middle Snake (sms).
## ``dataA`` sequence A
## ``lowerA`` lower bound of the actual range in dataA
@@ -151,10 +96,10 @@ proc sms(dataA: var DiffData; lowerA, upperA: int; dataB: DiffData; lowerB, uppe
## ``upVector`` a vector for the (u,v) to (N,M) search. Passed as a parameter for speed reasons.
## Returns a MiddleSnakeData record containing x,y and u,v.
let max: int = dataA.len + dataB.len + 1
let max = dataA.len + dataB.len + 1
let downK = lowerA - lowerB; # the k-line to start the forward search
let upK = upperA - upperB; # the k-line to start the reverse search
let downK = lowerA - lowerB # the k-line to start the forward search
let upK = upperA - upperB # the k-line to start the reverse search
let delta = (upperA - lowerA) - (upperB - lowerB)
let oddDelta = (delta and 1) != 0
@@ -166,75 +111,64 @@ proc sms(dataA: var DiffData; lowerA, upperA: int; dataB: DiffData; lowerB, uppe
let maxD = ((upperA - lowerA + upperB - lowerB) div 2) + 1
# Debug.Write(2, "sms", String.Format("Search the box: A[{0}-{1}] to B[{2}-{3}]", lowerA, upperA, lowerB, upperB))
# init vectors
downVector[downOffset + downK + 1] = lowerA
upVector[upOffset + upK - 1] = upperA
for D in 0 .. maxD:
# Extend the forward path.
for k in countUp(downK - D, downK + D, 2):
# Debug.Write(0, "sms", "extend forward path " + k.ToString())
# find the only or better starting point
var x, y: int
var x: int
if k == downK - D:
x = downVector[downOffset + k + 1]; # down
x = downVector[downOffset + k + 1] # down
else:
x = downVector[downOffset + k - 1] + 1; # a step to the right
if (k < downK + D) and (downVector[downOffset + k + 1] >= x):
x = downVector[downOffset + k + 1]; # down
x = downVector[downOffset + k - 1] + 1 # a step to the right
if k < downK + D and downVector[downOffset + k + 1] >= x:
x = downVector[downOffset + k + 1] # down
y = x - k
var y = x - k
# find the end of the furthest reaching forward D-path in diagonal k.
while (x < upperA) and (y < upperB) and (dataA.data[x] == dataB.data[y]):
while x < upperA and y < upperB and dataA.data[x] == dataB.data[y]:
inc x
inc y
downVector[downOffset + k] = x
# overlap ?
if oddDelta and (upK - D < k) and (k < upK + D):
if oddDelta and upK - D < k and k < upK + D:
if upVector[upOffset + k] <= downVector[downOffset + k]:
result.x = downVector[downOffset + k]
result.y = downVector[downOffset + k] - k
return
return Smsrd(x: downVector[downOffset + k],
y: downVector[downOffset + k] - k)
# Extend the reverse path.
for k in countUp(upK - D, upK + D, 2):
# Debug.Write(0, "sms", "extend reverse path " + k.ToString())
# find the only or better starting point
var x, y: int
var x: int
if k == upK + D:
x = upVector[upOffset + k - 1]; # up
x = upVector[upOffset + k - 1] # up
else:
x = upVector[upOffset + k + 1] - 1; # left
if (k > upK - D) and (upVector[upOffset + k - 1] < x):
x = upVector[upOffset + k - 1]; # up
# if
y = x - k
x = upVector[upOffset + k + 1] - 1 # left
if k > upK - D and upVector[upOffset + k - 1] < x:
x = upVector[upOffset + k - 1] # up
while (x > lowerA) and (y > lowerB) and (dataA.data[x - 1] == dataB.data[y - 1]):
var y = x - k
while x > lowerA and y > lowerB and dataA.data[x - 1] == dataB.data[y - 1]:
dec x
dec y
upVector[upOffset + k] = x
# overlap ?
if (not oddDelta) and (downK - D <= k) and (k <= downK + D):
if not oddDelta and downK-D <= k and k <= downK+D:
if upVector[upOffset + k] <= downVector[downOffset + k]:
result.x = downVector[downOffset + k]
result.y = downVector[downOffset + k] - k
return
return Smsrd(x: downVector[downOffset + k],
y: downVector[downOffset + k] - k)
assert false, "the algorithm should never come here."
proc lcs(dataA: var DiffData; lowerA, upperA: int; dataB: var DiffData; lowerB, upperB: int; downVector, upVector: var openArray[int]): void =
proc lcs(dataA: var DiffData; lowerA, upperA: int; dataB: var DiffData; lowerB, upperB: int;
downVector, upVector: var openArray[int]) =
## This is the divide-and-conquer implementation of the longes common-subsequence (lcs)
## algorithm.
## The published algorithm passes recursively parts of the A and B sequences.
@@ -247,14 +181,13 @@ proc lcs(dataA: var DiffData; lowerA, upperA: int; dataB: var DiffData; lowerB,
## ``upperB`` upper bound of the actual range in dataB (exclusive)
## ``downVector`` a vector for the (0,0) to (x,y) search. Passed as a parameter for speed reasons.
## ``upVector`` a vector for the (u,v) to (N,M) search. Passed as a parameter for speed reasons.
# make mutable copy
# make mutable copy:
var lowerA = lowerA
var lowerB = lowerB
var upperA = upperA
var upperB = upperB
# Debug.Write(2, "lcs", String.Format("Analyse the box: A[{0}-{1}] to B[{2}-{3}]", lowerA, upperA, lowerB, upperB))
# Fast walkthrough equal lines at the start
while lowerA < upperA and lowerB < upperB and dataA.data[lowerA] == dataB.data[lowerB]:
inc lowerA
@@ -286,20 +219,16 @@ proc lcs(dataA: var DiffData; lowerA, upperA: int; dataB: var DiffData; lowerB,
lcs(dataA, lowerA, smsrd.x, dataB, lowerB, smsrd.y, downVector, upVector)
lcs(dataA, smsrd.x, upperA, dataB, smsrd.y, upperB, downVector, upVector) # 2002.09.20: no need for 2 points
# lcs()
proc createDiffs(dataA, dataB: DiffData): seq[Item] =
## Scan the tables of which lines are inserted and deleted,
## producing an edit script in forward order.
var startA: int
var startB: int
var lineA: int
var lineB: int
var startA = 0
var startB = 0
var lineA = 0
var lineB = 0
while lineA < dataA.len or lineB < dataB.len:
if (lineA < dataA.len) and (not dataA.modified[lineA]) and
(lineB < dataB.len) and (not dataB.modified[lineB]):
if lineA < dataA.len and not dataA.modified[lineA] and
lineB < dataB.len and not dataB.modified[lineB]:
# equal lines
inc lineA
inc lineB
@@ -309,21 +238,16 @@ proc createDiffs(dataA, dataB: DiffData): seq[Item] =
startB = lineB
while lineA < dataA.len and (lineB >= dataB.len or dataA.modified[lineA]):
# while (lineA < dataA.len and dataA.modified[lineA])
inc lineA
while lineB < dataB.len and (lineA >= dataA.len or dataB.modified[lineB]):
# while (lineB < dataB.len and dataB.modified[lineB])
inc lineB
if (startA < lineA) or (startB < lineB):
# store a new difference-item
var aItem: Item
aItem.startA = startA
aItem.startB = startB
aItem.deletedA = lineA - startA
aItem.insertedB = lineB - startB
result.add aItem
result.add Item(startA: startA,
startB: startB,
deletedA: lineA - startA,
insertedB: lineB - startB)
proc diffInt*(arrayA, arrayB: openArray[int]): seq[Item] =
@@ -333,10 +257,10 @@ proc diffInt*(arrayA, arrayB: openArray[int]): seq[Item] =
## Returns a array of Items that describe the differences.
# The A-Version of the data (original data) to be compared.
var dataA = newDiffData(@arrayA)
var dataA = newDiffData(@arrayA, arrayA.len)
# The B-Version of the data (modified data) to be compared.
var dataB = newDiffData(@arrayB)
var dataB = newDiffData(@arrayB, arrayB.len)
let max = dataA.len + dataB.len + 1
## vector for the (0,0) to (x,y) search
@@ -345,9 +269,9 @@ proc diffInt*(arrayA, arrayB: openArray[int]): seq[Item] =
var upVector = newSeq[int](2 * max + 2)
lcs(dataA, 0, dataA.len, dataB, 0, dataB.len, downVector, upVector)
return createDiffs(dataA, dataB)
result = createDiffs(dataA, dataB)
proc diffText*(textA,textB: string): seq[Item] =
proc diffText*(textA, textB: string): seq[Item] =
## Find the difference in 2 text documents, comparing by textlines.
## The algorithm itself is comparing 2 arrays of numbers so when comparing 2 text documents
## each line is converted into a (hash) number. This hash-value is computed by storing all
@@ -361,12 +285,12 @@ proc diffText*(textA,textB: string): seq[Item] =
## Returns a seq of Items that describe the differences.
# prepare the input-text and convert to comparable numbers.
var h = initTable[string,int]() # TextA.len + TextB.len <- probably wrong initial size
var h = initTable[string, int]() # TextA.len + TextB.len <- probably wrong initial size
# The A-Version of the data (original data) to be compared.
var dataA = newDiffData(diffCodes(textA, h))
var dataA = diffCodes(textA, h)
# The B-Version of the data (modified data) to be compared.
var dataB = newDiffData(diffCodes(textB, h))
var dataB = diffCodes(textB, h)
h.clear # free up hashtable memory (maybe)
@@ -380,7 +304,7 @@ proc diffText*(textA,textB: string): seq[Item] =
optimize(dataA)
optimize(dataB)
return createDiffs(dataA, dataB)
result = createDiffs(dataA, dataB)
when isMainModule:
@@ -390,7 +314,7 @@ when isMainModule:
$it.deletedA & "." & $it.insertedB & "." & $it.startA & "." & $it.startB & "*"
)
proc main(): void =
proc main() =
var a, b: string
stdout.writeLine("Diff Self Test...")